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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014558.1_9511_9600_F

Intron Information:

Intron Rank:
86825
Intron Class:
major
Intron Phase:
Intron Coordinates:
9511 - 9600
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTCTATGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.5
0.8
0.7
80.6
24.7
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
66.6
0.6
1.6
83.92
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012267
Chromosome:
PEDO01014558.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012836
232 - 10412
10181