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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014572.1_748_2017_F

Intron Information:

Intron Rank:
147892
Intron Class:
major
Intron Phase:
Intron Coordinates:
748 - 2017
Intron Length:
1270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTCTCAGTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.5
0.66
0.7
76.5
25.6
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
52.6
0.06
1.8
65.85
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029619
Chromosome:
PEDO01014572.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039459
21 - 3049
3029