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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014594.1_2660_2732_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2660 - 2732
Intron Length:
73

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
TGTCCCCACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CTGTCCCCACGC
Flanking Amino Acid:
GGRCRDAEPREWDAAAKPPG
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
54
44.7
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
68.6
0.42
0.9
62.5
33.5
Minor 5ss
25.2
-2.9
3
22.7
36.8
Minor BPS
40
-0.7
2.2
50.74
46

Associated Gene:

Gene:
SNX21
Ensembl Gene ID:
ENSAPLG00000018530
Chromosome:
PEDO01014594.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024343
1109 - 3120
2012