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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014598.1_202_926_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202 - 926
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTGCCTCTAACG
Flanking Amino Acid:
GKTFNQVEIKPEMIGHYLGE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
79.2
0.66
0.8
73.8
31.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
51.9
-0
1.8
58.44
43

Associated Gene:

Gene:
RPS15
Ensembl Gene ID:
ENSAPLG00000029667
Chromosome:
PEDO01014598.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027531
21 - 1289
1269