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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014601.1_150_272_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
150 - 272
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCGCCGCCCTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
CCCCCGGTAACG
Flanking Amino Acid:
FVRALAAFLKKSGKLKVPEW
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.2
34.5
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
55.3
0.12
0.9
50.6
34.1
Minor 5ss
28.3
-2.5
3.1
31.3
36.6
Minor BPS
40.2
-0.8
2.5
43.71
48

Associated Gene:

Gene:
RPS19
Ensembl Gene ID:
ENSAPLG00000023033
Chromosome:
PEDO01014601.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024720
79 - 1206
1128