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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014607.1_284_1418_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
284 - 1418
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTTTTCCCT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTGCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CCTCCCTCCACC
Flanking Amino Acid:
CAFIVICVFACAIKNMTDSS
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.2
45.6
41.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
83.5
0.75
0.8
80.5
31.5
Minor 5ss
43.2
-0.7
2.8
56
42.2
Minor BPS
48.6
-0.1
2
59.91
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023360
Chromosome:
PEDO01014607.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020826
72 - 2565
2494