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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014607.1_4941_8154_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4941 - 8154
Intron Length:
3214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
CCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACCT
Flanking Amino Acid:
ELCRGQAGTDRADWFLLDSR
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.2
34.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
87.9
0.85
0.7
83.3
25
Minor 5ss
25.8
-2.8
3.1
31.5
42.2
Minor BPS
66
0.58
1.8
87.74
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023791
Chromosome:
PEDO01014607.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023536
2402 - 8739
6338