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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014609.1_497_1029_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
497 - 1029
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCTCGGTGA
5'SS Class:
weak_major
3'SS Sequence:
GGCTTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TCTCTCCCACCG
Flanking Amino Acid:
IWLETVSRMSLSSP
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.3
46.9
41.6
Major BPS
50
0
1.2
61.8
35.9
Major PPT
76.5
0.6
0.9
69.3
36.9
Minor 5ss
22.8
-3.1
4
29.7
37.3
Minor BPS
41.6
-0.7
2
49.26
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021668
Chromosome:
PEDO01014609.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027927
1 - 1041
1041