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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014631.1_1671_3682_R

Intron Information:

Intron Rank:
134946
Intron Class:
major
Intron Phase:
Intron Coordinates:
1671 - 3682
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGGAT
U12 Branch Point Sequence:
TTTTTCTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
41.3
Major BPS
48.8
-0
1.5
47.7
45.7
Major PPT
77.4
0.62
0.9
72.7
32.1
Minor 5ss
38.5
-1.3
3.4
48.7
47
Minor BPS
49.2
0.02
3.5
86.06
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019950
Chromosome:
PEDO01014631.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044983
1030 - 4454
3425