Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014631.1_2526_3682_R

Intron Information:

Intron Rank:

134941

Intron Class:

major

Intron Phase:

Intron Coordinates:

2526 - 3682

Intron Length:

1157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGCGCT

5'SS Class:

strong_major

3'SS Sequence:

TCCCCTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAC

U12 Branch Point Sequence:

TTCTACTTCCTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

69.7

41.3

Major BPS

63.9

0.35

1.3

64.5

42.5

Major PPT

83.5

0.75

0.7

75.7

32.8

Minor 5ss

38.5

-1.3

3.4

48.7

Minor BPS

40.5

-0.6

3.6

72.18

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019950

Chromosome:

PEDO01014631.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037391

2074 - 4454

2381