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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_12128_12831_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12128 - 12831
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTGTCTTAAAGT
Flanking Amino Acid:
KVMEALKKADADDQLSVQVD
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
74.2
37
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
88.2
0.86
0.6
85
22.6
Minor 5ss
41.7
-0.9
3.1
53.3
44.8
Minor BPS
53.4
0.19
2
71.92
45.4

Associated Gene:

Gene:
NUP133
Ensembl Gene ID:
ENSAPLG00000003540
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003697
9940 - 39714
29775