Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_12936_13979_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12936 - 13979

Intron Length:

1044

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTCTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

ATCTTTATAATC

Flanking Amino Acid:

WKIGQSAVAKLSLCKELQLP

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

27.6

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

88.4

0.86

0.7

83.2

25.3

Minor 5ss

31.4

-2.1

3.2

39.9

46.1

Minor BPS

55.6

0.16

1.5

64.6

35.4

Associated Gene:

Gene:

NUP133

Ensembl Gene ID:

ENSAPLG00000003540

Chromosome:

PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003697

9940 - 39714

29775