About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_18258_18856_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18258 - 18856
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TCTTCTTGAACA
Flanking Amino Acid:
NIQYMDLQQNRDGLVILAAA
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
80
0.75
1
78.6
31
Major PPT
75.6
0.58
1
72.9
36.2
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
74
0.75
1.3
80.01
36.1

Associated Gene:

Gene:
NUP133
Ensembl Gene ID:
ENSAPLG00000003540
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003697
9940 - 39714
29775