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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_19005_19860_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19005 - 19860
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GTAATGCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGATTGTTGATA
Flanking Amino Acid:
EVTQYNPSFQSEDEVMCCLV
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
75.9
35.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.2
0.48
1
66.1
44.9
Minor 5ss
44.8
-0.6
2.6
56.7
47.6
Minor BPS
49.4
-0
2
62.82
37.6

Associated Gene:

Gene:
NUP133
Ensembl Gene ID:
ENSAPLG00000003540
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003697
9940 - 39714
29775