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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_20009_20674_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20009 - 20674
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACC
Flanking Amino Acid:
PQEKIVFGIQGDSILGAGSC
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.6
0.53
0.8
70.7
34.5
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
63.2
0.4
1.7
74.15
36.9

Associated Gene:

Gene:
NUP133
Ensembl Gene ID:
ENSAPLG00000003540
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003697
9940 - 39714
29775