Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_22974_24526_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

22974 - 24526

Intron Length:

1553

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAA

U12 Branch Point Sequence:

TATTCTATGATT

Flanking Amino Acid:

DPRWAESVPEEAAGFSNTSL

Intron Amino Acid Position:

586

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.8

87.1

Major BPS

69.8

0.49

70.3

31.8

Major PPT

88.1

0.86

0.6

81.5

30.4

Minor 5ss

-0.8

2.9

57.2

47.1

Minor BPS

63.4

0.5

1.6

80.7

34.9

Associated Gene:

Gene:

NUP133

Ensembl Gene ID:

ENSAPLG00000003540

Chromosome:

PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003697

9940 - 39714

29775