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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_27596_29196_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
27596 - 29196
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGTTATTATCT
Flanking Amino Acid:
QRYMSQFADQNFSDFLFRWY
Intron Amino Acid Position:
893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
69.9
43.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.8
0.83
0.8
85.7
27.7
Minor 5ss
64.9
0.5
2.7
82.4
37.3
Minor BPS
55.3
0.24
1.9
75.09
41.6

Associated Gene:

Gene:
NUP133
Ensembl Gene ID:
ENSAPLG00000003540
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003697
9940 - 39714
29775