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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_44178_44302_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44178 - 44302
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CGTGTCTCAGGT
Flanking Amino Acid:
LSLYASGRTTGIVLDSGDGV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
80.8
0.69
0.9
72.8
42.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
41.7
-0.5
2
55.98
46.4

Associated Gene:

Gene:
ACTA1
Ensembl Gene ID:
ENSAPLG00000004146
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004261
43554 - 45445
1892