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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_45184_45301_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45184 - 45301
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
CGGCTTTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTACGTGCACT
Flanking Amino Acid:
ALAPSTMKIKIIAPPERKYS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.2
0.52
0.9
65.1
41.2
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
47.1
-0.1
2.6
77.64
44.4

Associated Gene:

Gene:
ACTA1
Ensembl Gene ID:
ENSAPLG00000004146
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004261
43554 - 45445
1892