About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014632.1_64607_66893_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64607 - 66893
Intron Length:
2287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTAACACTAACT
Flanking Amino Acid:
NVCASASVNEIHESALRAKN
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82
0.72
0.8
73.1
37.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
50.6
0.1
2
73.32
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002983
Chromosome:
PEDO01014632.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003012
57223 - 67067
9845