About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014641.1_307_936_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
307 - 936
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAA
U12 Branch Point Sequence:
CCTCCCCAAGTC
Flanking Amino Acid:
DEAIVELEVSATGTDPHLSL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
59
0.23
1.1
61.4
36.2
Major PPT
74.2
0.55
0.8
65.5
36.1
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
40.5
-0.7
2
47.96
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028265
Chromosome:
PEDO01014641.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020093
21 - 2284
2264