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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014656.1_4671_5069_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4671 - 5069
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCGTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTTCCCCCATGC
Flanking Amino Acid:
CVLALCGWTCGAVSSSSLLS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.7
0.49
0.8
65.3
30.5
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
39.9
-0.7
2.2
52.79
44.4

Associated Gene:

Gene:
ZC3HC1
Ensembl Gene ID:
ENSAPLG00000003832
Chromosome:
PEDO01014656.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003933
2365 - 6295
3931