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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014656.1_5228_5615_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5228 - 5615
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
TCTCTCTTCCCT
Flanking Amino Acid:
SLRAEDMKTMSLTEEKIASL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.7
31.1
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
77.4
0.62
0.7
72.5
25.7
Minor 5ss
36.2
-1.6
2.8
41.9
38.9
Minor BPS
41.8
-0.5
3.6
72.32
44.9

Associated Gene:

Gene:
ZC3HC1
Ensembl Gene ID:
ENSAPLG00000003832
Chromosome:
PEDO01014656.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003933
2365 - 6295
3931