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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014672.1_3419_3811_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3419 - 3811
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
CTCTCTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCTAT
U12 Branch Point Sequence:
TTTCTCTCTATT
Flanking Amino Acid:
TTDTLEALLMMPEMNNSVIS
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74.2
37
Major BPS
61.2
0.28
1.4
60.7
45.4
Major PPT
82.3
0.73
0.8
76.9
30.1
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
53.3
0.18
1.8
77.39
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016748
Chromosome:
PEDO01014672.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040842
920 - 7818
6899