Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014672.1_4906_5640_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4906 - 5640

Intron Length:

735

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGAC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

GTTTACTGAAGT

Flanking Amino Acid:

QTKGGERGKKEDLPKKRLLR

Intron Amino Acid Position:

316

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.5

32.8

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

91.3

0.93

0.6

84.4

30.6

Minor 5ss

29.5

-2.3

3.5

40.1

46.3

Minor BPS

57.1

0.3

79.08

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016748

Chromosome:

PEDO01014672.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040842

920 - 7818

6899