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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014714.1_257_1215_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
257 - 1215
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCCTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
AGCTCCTCACCC
Flanking Amino Acid:
INYKVDLDVGGVKNSLVAHD
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
66.3
45.2
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
74.7
0.56
0.8
69.7
31.1
Minor 5ss
33.1
-1.9
3.1
41.6
45
Minor BPS
51.4
0.02
1.9
61.85
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016876
Chromosome:
PEDO01014714.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031404
109 - 2075
1967