Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014743.1_1065_1153_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1065 - 1153

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGGAGG

5'SS Class:

major

3'SS Sequence:

CGTGTCCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAG

U12 Branch Point Sequence:

TGGTCCTCAGCT

Flanking Amino Acid:

HKDQRQMFFVISLDPPIKQG

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

62.2

43.8

Major BPS

58.4

0.21

1.5

67.6

40.6

Major PPT

77.7

0.62

0.9

73.4

37.1

Minor 5ss

26.4

-2.7

2.9

27.5

37.7

Minor BPS

59.9

0.39

1.8

77.43

44.5

Associated Gene:

Gene:

SSRP1

Ensembl Gene ID:

ENSAPLG00000015619

Chromosome:

PEDO01014743.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016330

52 - 4360

4309