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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014743.1_2561_3178_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2561 - 3178

Intron Length:

618

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGCAGGGG

5'SS Class:

weak_major

3'SS Sequence:

TTTTCTCGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCGAA

U12 Branch Point Sequence:

TGTTCCCGAATC

Flanking Amino Acid:

SSDGSGEETGGFDSNASASS

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.9

0.09

1.1

39.2

Major BPS

48.8

-0

1.3

46.3

38.7

Major PPT

79.7

0.67

0.9

73.3

37.1

Minor 5ss

-3.3

3.4

19.7

37.9

Minor BPS

59.5

0.28

1.8

73.28

37.2

Associated Gene:

Gene:

SSRP1

Ensembl Gene ID:

ENSAPLG00000015619

Chromosome:

PEDO01014743.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016330

52 - 4360

4309