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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014743.1_747_833_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
747 - 833
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCGGAT
U12 Branch Point Sequence:
GTGGCCGGATCC
Flanking Amino Acid:
TQEDGVDPVEAFAQNVLSKA
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
44.5
-0.3
1.5
39
42.9
Major PPT
85.4
0.8
0.7
80.7
24.4
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
40.7
-0.7
2.3
51.62
45.3

Associated Gene:

Gene:
SSRP1
Ensembl Gene ID:
ENSAPLG00000015619
Chromosome:
PEDO01014743.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016330
52 - 4360
4309