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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014767.1_1545_1644_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1545 - 1644
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TCTGTCTGTCCG
Flanking Amino Acid:
AYTAFIFLRTGHLAGPVLCH
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
72
0.5
0.9
65.5
36.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
33
-1.4
3.5
46.97
46.1

Associated Gene:

Gene:
RCE1
Ensembl Gene ID:
ENSAPLG00000023570
Chromosome:
PEDO01014767.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037633
440 - 3257
2818