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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014767.1_876_3146_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
876 - 3146
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGCGGGCC
5'SS Class:
major
3'SS Sequence:
CCCAAAAACCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAAAAAC
U12 Branch Point Sequence:
TTCCCCCCAAAC
Flanking Amino Acid:
VVKLCKKKLQHVPPKPALTP
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
72.8
31.6
Major BPS
46.3
-0.2
1
49
29.8
Major PPT
51
0.02
1
39.9
36.8
Minor 5ss
13.6
-4.2
3.8
23.7
37.5
Minor BPS
47.5
-0.2
2
62.69
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028411
Chromosome:
PEDO01014767.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022257
429 - 3985
3557