Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014781.1_796_914_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

796 - 914

Intron Length:

119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGCGGC

5'SS Class:

major

3'SS Sequence:

TCGCTCCTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGGTAAC

U12 Branch Point Sequence:

GCGGCGGTAACG

Flanking Amino Acid:

TLKTRLENLEQFSRMNSSGQ

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

1.1

62.4

43.6

Major BPS

48.8

-0

1.3

50.7

41.5

Major PPT

79.2

0.66

0.8

31.8

Minor 5ss

35.6

-1.6

3.5

50.3

46.3

Minor BPS

39.5

-0.9

2.6

43.02

48.3

Associated Gene:

Gene:

NPTX1

Ensembl Gene ID:

ENSAPLG00000016516

Chromosome:

PEDO01014781.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042461

21 - 2667

2647