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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014781.1_796_917_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
796 - 917
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCGGC
5'SS Class:
major
3'SS Sequence:
CTCCTTGCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
GCTCCTTGCAGC
Flanking Amino Acid:
TLKTRLENLEFSRMNSSGQT
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
62.4
43.6
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
69.7
0.44
0.9
65.7
34.7
Minor 5ss
35.6
-1.6
3.5
50.3
46.3
Minor BPS
41.6
-0.6
2
48.91
41.3

Associated Gene:

Gene:
NPTX1
Ensembl Gene ID:
ENSAPLG00000016516
Chromosome:
PEDO01014781.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017442
21 - 2667
2647