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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014782.1_2171_2328_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2171 - 2328
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGCA
5'SS Class:
major
3'SS Sequence:
CTTTCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACCCAT
U12 Branch Point Sequence:
CTTTCCTCCACA
Flanking Amino Acid:
TLGKALGGAAGGYTTGPKPL
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
65.2
34.3
Major BPS
52.1
0.05
1.2
62.1
35.8
Major PPT
81.7
0.71
0.7
76.2
25.9
Minor 5ss
23.4
-3.1
3.3
29.7
43.3
Minor BPS
60.8
0.33
2
75.44
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017636
Chromosome:
PEDO01014782.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034113
241 - 3528
3288