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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014794.1_1722_2166_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1722 - 2166
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCATT
5'SS Class:
major
3'SS Sequence:
GTTGCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGCCACTGACGT
Flanking Amino Acid:
YETLRRIGETRPGDAILGLT
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
81.8
38.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
76
0.58
1
69.1
41.8
Minor 5ss
40.7
-1
3
57.9
46.3
Minor BPS
40.8
-0.6
2
56.08
45.5

Associated Gene:

Gene:
SLC26A11
Ensembl Gene ID:
ENSAPLG00000020854
Chromosome:
PEDO01014794.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047925
21 - 3766
3746
ENSAPLT00000034024
21 - 4307
4287
ENSAPLT00000033756
438 - 5911
5474