Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014794.1_3040_3568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3040 - 3568

Intron Length:

529

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

TCGTCCTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

GCGTACTTACTG

Flanking Amino Acid:

VRRGGRAAPAGFLLDFISCP

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

67.2

38.1

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

74.1

0.54

68.9

Minor 5ss

26.2

-2.7

3.2

34.3

Minor BPS

47.3

-0.3

1.9

48.53

45.3

Associated Gene:

Gene:

SLC26A11

Ensembl Gene ID:

ENSAPLG00000020854

Chromosome:

PEDO01014794.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034024

21 - 4307

4287