Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014794.1_4168_4279_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4168 - 4279

Intron Length:

112

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCTCG

5'SS Class:

major

3'SS Sequence:

CCCTTCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTCAC

U12 Branch Point Sequence:

TCCCCGCTCACC

Flanking Amino Acid:

APARNALLLLADDGGFESGA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

59.3

42.4

Major BPS

57.5

0.19

1.1

60.7

37.6

Major PPT

74.5

0.55

0.7

68.7

Minor 5ss

38.3

-1.3

2.9

39.7

45.8

Minor BPS

-0.8

2.5

52.17

45.2

Associated Gene:

Gene:

SGSH

Ensembl Gene ID:

ENSAPLG00000002678

Chromosome:

PEDO01014794.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002714

4086 - 6676

2591