Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014794.1_5563_5645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5563 - 5645

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGAGCT

5'SS Class:

strong_major

3'SS Sequence:

CTGCCATCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAT

U12 Branch Point Sequence:

CCTCCCGCAGCC

Flanking Amino Acid:

QYTTIGRMDQGIGLVLEELR

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

72.5

37.3

Major BPS

49.9

-0

1.4

61.8

44.5

Major PPT

68.5

0.42

0.9

61.9

33.6

Minor 5ss

31.7

-2.1

3.6

47.8

47.9

Minor BPS

41.2

-0.6

2.3

51.78

45.3

Associated Gene:

Gene:

SGSH

Ensembl Gene ID:

ENSAPLG00000002678

Chromosome:

PEDO01014794.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002714

4086 - 6676

2591