Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014794.1_5850_5941_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5850 - 5941

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCCCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

CCTCCTCTCACT

Flanking Amino Acid:

QVSSAFASLLDVTPTILDWF

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

67.1

39.6

Major BPS

72.7

0.56

30.1

Major PPT

82.7

0.74

0.7

31.2

Minor 5ss

31.3

-2.1

3.3

34.9

41.1

Minor BPS

46.9

-0.1

2.1

65.42

45.3

Associated Gene:

Gene:

SGSH

Ensembl Gene ID:

ENSAPLG00000002678

Chromosome:

PEDO01014794.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002714

4086 - 6676

2591