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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014804.1_2624_3075_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2624 - 3075
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
GGCTCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACCCAT
U12 Branch Point Sequence:
GAATTTGTACCC
Flanking Amino Acid:
HDRFDADLSKTPGPAAFPKI
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
64.5
0.36
1.2
72.7
34.4
Major PPT
76
0.59
0.9
69.1
37
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
43.5
-0.5
2.1
52.19
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025099
Chromosome:
PEDO01014804.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033532
1569 - 3565
1997