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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014814.1_217_1479_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
217 - 1479
Intron Length:
1263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAAAT
U12 Branch Point Sequence:
CACCCCAAAAAT
Flanking Amino Acid:
HILNPHEDPQLPKELVLKLY
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
50.5
0.01
1.1
57.3
34.4
Major PPT
68
0.41
0.8
58.1
33.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
43.4
-0.4
2
56.86
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029759
Chromosome:
PEDO01014814.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025374
21 - 3177
3157