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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014827.1_3866_3936_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3866 - 3936
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACCC
Flanking Amino Acid:
QLQACRVLLQQSSAHTAGGP
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
74.2
0.55
0.7
68.5
25.1
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
43.7
-0.5
2.1
51.46
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013566
Chromosome:
PEDO01014827.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035148
1862 - 7722
5861
ENSAPLT00000021926
1862 - 7722
5861
ENSAPLT00000014129
1862 - 7722
5861