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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014827.1_6282_6504_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6282 - 6504
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
GTGGCTTTATCT
Flanking Amino Acid:
KAEKKKLKKKKQKDRKKQEK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
80.1
0.68
0.8
76.8
32
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
57.1
0.3
1.7
72.08
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013566
Chromosome:
PEDO01014827.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021926
1862 - 7722
5861
ENSAPLT00000014129
1862 - 7722
5861
ENSAPLT00000035148
1862 - 7722
5861