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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014829.1_3349_5064_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3349 - 5064
Intron Length:
1716

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCGAAGAGA
5'SS Class:
weak_major
3'SS Sequence:
GTTTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ACTCTCTAAACC
Flanking Amino Acid:
TLDDPGVLDQSAR
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.3
59
37.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
79.5
0.66
0.9
73.5
37
Minor 5ss
17.6
-3.7
3.7
25.4
37.4
Minor BPS
57.4
0.21
1.7
65.52
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019901
Chromosome:
PEDO01014829.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034822
3136 - 5073
1938