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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014847.1_5485_6325_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5485 - 6325
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCGGC
5'SS Class:
major
3'SS Sequence:
TGCCCCCCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
GTGCCCCCACCC
Flanking Amino Acid:
QQIKTWNIGKCELYHWVDLL
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
57.7
42
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
65.5
0.35
0.8
62.4
28.7
Minor 5ss
30.2
-2.3
3.4
41.2
45.5
Minor BPS
42.9
-0.5
2
53.98
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019504
Chromosome:
PEDO01014847.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018307
803 - 6559
5757