Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014852.1_253_1422_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

253 - 1422

Intron Length:

1170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTGAGTGGT

5'SS Class:

major

3'SS Sequence:

CCCGATCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

TTTCCCCGATCC

Flanking Amino Acid:

LLTARRKDAKSVKIKKNKDN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

65.2

40.8

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

64.4

0.33

0.9

56.4

33.3

Minor 5ss

-2.2

3.3

40.9

45.4

Minor BPS

48.9

-0.1

70.12

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018959

Chromosome:

PEDO01014852.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047084

21 - 1781

1761