About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014882.1_423_1229_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
423 - 1229
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCGCCAGGG
5'SS Class:
weak_major
3'SS Sequence:
TCCCCTCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
CTCCCCTCCAGC
Flanking Amino Acid:
LVGFSCLGLLQIYTPRPSDR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.4
0.01
1.3
42.3
41.5
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
70.6
0.46
0.8
66.2
28.4
Minor 5ss
18.7
-3.6
4
26.2
39
Minor BPS
42.7
-0.5
2.2
51.61
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002901
Chromosome:
PEDO01014882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002933
360 - 1775
1416