Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014890.1_1804_1902_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1804 - 1902

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCTCACGCC

5'SS Class:

major

3'SS Sequence:

GGACATCGTGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCACAA

U12 Branch Point Sequence:

TGACCGTCATCT

Flanking Amino Acid:

SSASCRWQQEPDDYNPISAI

Intron Amino Acid Position:

173

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.7

0.25

1.3

58.7

41.7

Major BPS

53.3

0.08

1.1

37.5

Major PPT

44.7

-0.3

1.7

42.8

Minor 5ss

21.9

-3.2

41.6

Minor BPS

43.2

-0.4

2.3

63.81

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027784

Chromosome:

PEDO01014890.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035924

512 - 2613

2102