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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014890.1_712_1487_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
712 - 1487
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCA|GCCAGCCGA
5'SS Class:
weak_major
3'SS Sequence:
TGGCCATCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GCATCTCTCACA
Flanking Amino Acid:
SLHSSCGSGYQGSQPRDSQV
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.05
1.4
45.8
42
Major BPS
72.7
0.56
1
75
30.1
Major PPT
62.9
0.29
1
60
40.6
Minor 5ss
24.5
-2.9
3.8
36
41.5
Minor BPS
46.8
-0.2
2
57.36
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027784
Chromosome:
PEDO01014890.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035924
512 - 2613
2102