Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01014902.1_497_896_F

Intron Information:

Intron Rank:

149900

Intron Class:

major

Intron Phase:

Intron Coordinates:

497 - 896

Intron Length:

400

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTGGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGCTTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

78.8

36.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.5

67.4

37.9

Minor 5ss

32.9

-2

3.4

47.9

47.8

Minor BPS

72.1

0.77

1.1

79.54

37.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030631

Chromosome:

PEDO01014902.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020432

21 - 2531

2511